ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGGCTCAAAAGATTCGTCT miRNA* ATTTTTTTTGAATCTAAAC mismatches: 2 bulges: 2 |
pre-miRNA
TCAAATCATGGCGTAATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACTGTGCAATTGGTTTTTTTTTCGTCCACATTTAATGTTTCATGCAT
GTGTCCAAACATTTAATGTGATGTTTTTGGTCAGATTTTTTTTGAATCTAAACAAAGCCATAATTT
dot-bracket secondary structure
..((((.(((((....(((((.((((((((...((((.((.....(((((((.....))))..(((........)))..((((((.((((((((((....
)))...))))))).)))))).))).....)).)))).)))))))).))))).....))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCAAATCATGGCGTAATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACTGTGCAATTGGTTTTTTTTTCGTCCACATTTAATGTTTCATGCAT
GTGTCCAAACATTTAATGTGATGTTTTTGGTCAGATTTTTTTTGAATCTAAACAAAGCCATAATTT
dot-bracket secondary structure
..((((.(((((....(((((.((((((((...((((.((.....(((((((.....))))..(((........)))..((((((.((((((((((....
)))...))))))).)))))).))).....)).)))).)))))))).))))).....))))).))))
SIMILARITIES| miRBase osa-MIR2124a: 6e-22 PMRD osa-miRf11301-akr: 1e-17 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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