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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004058
species: Oryza sativa
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAGGCTCAAAAGATTCGTCT

miRNA*
ATTTTTTTTGAATCTAAAC

mismatches: 2
bulges: 2

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pre-miRNA
TCAAATCATGGCGTAATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACTGTGCAATTGGTTTTTTTTTCGTCCACATTTAATGTTTCATGCAT
GTGTCCAAACATTTAATGTGATGTTTTTGGTCAGATTTTTTTTGAATCTAAACAAAGCCATAATTT


dot-bracket secondary structure
..((((.(((((....(((((.((((((((...((((.((.....(((((((.....))))..(((........)))..((((((.((((((((((....
)))...))))))).)))))).))).....)).)))).)))))))).))))).....))))).))))



SIMILARITIES
miRBase osa-MIR2124a: 6e-22

PMRD osa-miRf11301-akr: 1e-17

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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