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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST004058
species:
Oryza sativa
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGGCTCAAAAGATTCGTCT
miRNA*
ATTTTTTTTGAATCTAAAC
mismatches:
2
bulges:
2
View larger
pre-miRNA
TCAAATCATGGCGTAA
TTAGGCTCAAAAGATTCGTCT
CGCAATTTACATGCAAACTGTGCAATTGGTTTTTTTTTCGTCCACATTTAATGTTTCATGCAT
GTGTCCAAACATTTAATGTGATGTTTTTGGTCAG
ATTTTTTTTGAATCTAAAC
AAAGCCATAATTT
dot-bracket secondary structure
..((((.(((((....
(((((.((((((((...((((
.((.....(((((((.....))))..(((........)))..((((((.((((((((((....
)))...))))))).)))))).))).....)).))
)).)))))))).)))))..
...))))).))))
SIMILARITIES
miRBase
osa-MIR2124a
:
6e-22
PMRD
osa-miRf11301-akr
:
1e-17
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record