ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf10
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGGCTCAAAAGATTCGTCT miRNA* ACAGATTTATTAAGCCTAATT mismatches: 3 bulges: 0 |
pre-miRNA
CGCTTTTAAACTGTGAGACAGATTTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACTGTAGCATCACATTGTTAAATCATGACGTAATTAGGCT
CAAAAGATTCGTCTCGCAATTTACATGC
dot-bracket secondary structure
.((...((((.((((((((.(((((.((.((((((((((...(((..((((((((((((......)))))....)))))))...)))...))))))))))
.)).))))).)))))))).))))...))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCTTTTAAACTGTGAGACAGATTTATTAAGCCTAATTAATCCATCATTAGCAAATGTTTACTGTAGCATCACATTGTTAAATCATGACGTAATTAGGCT
CAAAAGATTCGTCTCGCAATTTACATGC
dot-bracket secondary structure
.((...((((.((((((((.(((((.((.((((((((((...(((..((((((((((((......)))))....)))))))...)))...))))))))))
.)).))))).)))))))).))))...))
SIMILARITIES| miRBase osa-MIR2124a: 4e-41 PMRD osa-miR442: 6e-37 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
