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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004061
species: Oryza sativa
miRNA family: MIRf10
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACACAAAAGATTCGTCTCGCG

miRNA*
CGAGACGAATTTTTTGAGTCT

mismatches: 1
bulges: 0

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pre-miRNA
GACACGAATGAAGAAACTAATTTTATAACTCGCCTGGAAACCGCGAGACGAATTTTTTGAGTCTAATTAATCCGCCATTAGCACATGTGGATTACTGTAG
CACTTATGGCTAATCATGGACTAATTAGACACAAAAGATTCGTCTCGCGATTTCCTCTCTAACTGTGCAATTAGTTTTTCTTTTAATCT


dot-bracket secondary structure
.....((.((((((((((((((.((((........(((((.((((((((((((((((((.(((((((((.((((..((((((....(((...........
))).....))))))..)))).))))))))).)))))))))))))))))).)))))........)))).))))))))))...)))).)).



SIMILARITIES
miRBase osa-MIR445h: 0.000000003

PMRD osa-miRf11785-akr: 1e-38

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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