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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004063
species:
Oryza sativa
miRNA family:
MIRf10
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAGGCTCAAAAGATTCGTCT
miRNA*
ACGAATCTTTGAGCCTAATT
mismatches:
0
bulges:
1
View larger
pre-miRNA
AAAAAACCAATTGCACAGTTCGCATGTAAATCGCGAG
ACGAATCTTTGAGCCTAATT
AGTCCATGATTAGCCATAAGTGCTACAGTAACCCACATGTGCT
AATGACAGATTAATTAGGCTCAAAAGATTCCACATGTGCTAATGACAGATTAA
TTAGGCTCAAAAGATTCGTCT
CACGGTTTCCAGGTGAGTTATGAAAT
TAGTTTTT
dot-bracket secondary structure
.((((((.((((.((.(((((((.((.((((((.(((
((((((((((((((((((((
((((....((((((....................(((((((((
(((.........))))).............)))))))))))))....))))))
)))))))).))))))))))))
).)))))).)).))))))).)).)))
).))))))
SIMILARITIES
miRBase
osa-MIR2124a
:
5e-17
PMRD
osa-miRf11785-akr
:
2e-38
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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