ABOUT THIS RECORDspecies: Glycine soja
miRNA family: MIR2109
source: miRBase, original name: gso-MIR2109 (MI0015369)
Taxonomy by NCBI:
Glycine soja Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGAGTGTCTTCGCCTCTGA miRNA* GGAGGCGTAGATACTCACACC mismatches: 2 bulges: 0 |
pre-miRNA
AGCCAGTGAAATCGGTGCGAGTGTCTTCGCCTCTGAGAGAGATACTATGAGATCTCAAGCCTCGGAGGCGTAGATACTCACACCTCTTTTTCTGGCT
dot-bracket secondary structure
((((((.((((..((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))..)))).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
AGCCAGTGAAATCGGTGCGAGTGTCTTCGCCTCTGAGAGAGATACTATGAGATCTCAAGCCTCGGAGGCGTAGATACTCACACCTCTTTTTCTGGCT
dot-bracket secondary structure
((((((.((((..((((.((((((((.((((((((((.(((((........)))))....)))))))))).)))))))).))))..)))).))))))
SIMILARITIES| miRBase gma-MIR2109: 1e-34 PMRD gma-miR2109: 1e-34 microPC no hits | UniProt no hits RFAM no hits |
Identical with: gma-MIR2109 from miRBase (MNEST040539) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Chen R, Hu Z, Zhang H, J Integr Plant Biol. 51:1071-1079(2009)., "Identification of microRNAs in wild soybean (Glycine soja)"
