ABOUT THIS RECORDspecies: Medicago truncatula
source: miRBase, original name: mtr-MIR169f (MI0005583)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCCAAGGATGACTTGCCTA miRNA* GGCAGGTATCCTAGGCTTTT mismatches: 2 bulges: 1 |
pre-miRNA
ATTTATAAGCCAAGGATGACTTGCCTAGCTAAAAACCATTTACATTAATTGGGGACTTAATTTGTATATGTTATGTCTGATCGATGATGAGTATGTCCCTT
GTTTAGTTTATTAGCAGGCAGGTATCCTAGGCTTTTTGA
dot-bracket secondary structure
).....(((((.((((((.(((((((.(((((((((.....(((......((((((...(((..(....((((....)))).....)..)))..)))))))
))...)))).)))))))))))))))))).))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
ATTTATAAGCCAAGGATGACTTGCCTAGCTAAAAACCATTTACATTAATTGGGGACTTAATTTGTATATGTTATGTCTGATCGATGATGAGTATGTCCCTT
GTTTAGTTTATTAGCAGGCAGGTATCCTAGGCTTTTTGA
dot-bracket secondary structure
).....(((((.((((((.(((((((.(((((((((.....(((......((((((...(((..(....((((....)))).....)..)))..)))))))
))...)))).)))))))))))))))))).))))).....
SIMILARITIES| miRBase sbi-MIR169h: 2.0E-6 PMRD mtr-miR169d: 1.0E-7 microPC miR169: 0.0004 | UniProt no hits RFAM 2MIR169_2: 7.0E-74 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
