miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST040842
species: Medicago truncatula
source: miRBase, original name: mtr-MIR2608 (MI0011861)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTTGTACATATATCACTACTCT

miRNA*
 AGAAATGATATTTGTACAACTA

mismatches: 4
bulges: 0
View larger
pre-miRNA
 ATTGCAAAGAGAAATGATATTTGTACAACTATTTTCTAACAACTTTTTGACAACTTTCTCTCTCAGACTCACATTATCTTCTTATTCCCTCTCTTCCTTT
TTCTCTCTCTCTCTCTCTCTCTATTATTTTTGACCAATCAAAAGAGAGAAAACCAAAGTTGTCATGAAAGTTGTACCAAAGAGTTGTACATATATCACTA
CTCTATTGCAAA

dot-bracket secondary structure
.((((((((((...((((((.(((((((((.((((...(((((((((((((((((((.((.....))...............................((
((((((((....................(((((....)))))))))))))))..)))))))))).)))))))))...))))))))))))).))))))...
)))).)))))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"



Liczniki na strone;