ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2609
source: miRBase, original name: mtr-MIR2609a (MI0011862)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGTAATAGGTTCTCACT miRNA* TGCTATACCTACATGGTTTTAGT mismatches: 6 bulges: 2 |
pre-miRNA
GGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTCACTTGTTTGGCAAAAGTTTAGATGTATGGAAATCTTCATTAGATAAATATGAAAGAGTTCTTCACA
AAGAGATTCATGAAATTCTTAAAGTTAGCTATGATGATTTGGATGATGATCAGAAGGGTATTTTTCTTGACATCGCTTGTTTCTTCAATTCTTATGAAAT
GAGCTATGCCAAAGAATTGCTATACCTACATGGTTTTAGTGCTGAAAATGGAATTCA
dot-bracket secondary structure
....((((((((((.((((((.((.(((((...((.((.(((((((........(((((..((((((((((...(((....((((((....(((((....
))))).))))))....)))............((((.(((.....))).)))))))))....)))))...)))))(((..((((............)))).
.)))..))))))).)).))....)))))..)).)))))).)))...)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
GGCCTTCCATTGGCTTTGGAAGTAATAGGTTCTCACTTGTTTGGCAAAAGTTTAGATGTATGGAAATCTTCATTAGATAAATATGAAAGAGTTCTTCACA
AAGAGATTCATGAAATTCTTAAAGTTAGCTATGATGATTTGGATGATGATCAGAAGGGTATTTTTCTTGACATCGCTTGTTTCTTCAATTCTTATGAAAT
GAGCTATGCCAAAGAATTGCTATACCTACATGGTTTTAGTGCTGAAAATGGAATTCA
dot-bracket secondary structure
....((((((((((.((((((.((.(((((...((.((.(((((((........(((((..((((((((((...(((....((((((....(((((....
))))).))))))....)))............((((.(((.....))).)))))))))....)))))...)))))(((..((((............)))).
.)))..))))))).)).))....)))))..)).)))))).)))...)))))))....
SIMILARITIES| miRBase mtr-MIR2609c: 3e-145 PMRD no hits microPC no hits | UniProt sp|O82500|Y4117_ARATH: 0.00000000006 RFAM no hits |
Identical with: mtr-MIR2609c from miRBase (MNEST040845) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
