ABOUT THIS RECORDspecies: Gossypium raimondii
miRNA family: MIR157
source: miRBase, original name: gra-MIR157b (MI0005643)
Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTTGCCTATGTGCATGCATCCCACTCCTTTGTGCTCTCTATGCTTCTGTCATCATC
dot-bracket secondary structure
..((.(((((((((((((((((((((((.(((((((((((......))).)))..))).)).)))))))))))))).))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
GTTGTTGACAGAAGATAGAGAGCACAGATGATGGTGTTGCCTATGTGCATGCATCCCACTCCTTTGTGCTCTCTATGCTTCTGTCATCATC
dot-bracket secondary structure
..((.(((((((((((((((((((((((.(((((((((((......))).)))..))).)).)))))))))))))).))))))))).))..
SIMILARITIES| miRBase ptc-MIR156j: 5e-18 PMRD gra-miR157b: 1e-46 microPC miR157: 0.0000000000003 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
