ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR171
source: miRBase, original name: tcc-MIR171f (MI0017494)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAATGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
GCACAAAGAGAAAACGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGCTTTTTATGGGTGTTTTAATTTGATTGAGCCGTGCCAATATCACG
TTAATTACTTATCTTCA
dot-bracket secondary structure
............((((..((((((((.(((((((((((((((.(((.(.((((.........)))).).))).))))))))))))))).)))))))).))
))...............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
GCACAAAGAGAAAACGGGGATGTTGGAATGGCTCAATCAAATCAAATCTCCCAAGCTTTTTATGGGTGTTTTAATTTGATTGAGCCGTGCCAATATCACG
TTAATTACTTATCTTCA
dot-bracket secondary structure
............((((..((((((((.(((((((((((((((.(((.(.((((.........)))).).))).))))))))))))))).)))))))).))
))...............
SIMILARITIES| miRBase vvi-MIR171i: 3e-23 PMRD vvi-miR171i: 3e-23 microPC miR171: 0.000000000000002 | UniProt no hits RFAM MIR171_1: 8e-27 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
