ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIR172
source: miRBase, original name: tcc-MIR172c (MI0017499)
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATCTTGATGATGCTGCAT miRNA* GCGGCATCATCAAGATTCACA mismatches: 1 bulges: 0 |
pre-miRNA
CAATCTGTCAGTGTTTGCAGATGCGGCATCATCAAGATTCACAAACTTTAGTAAGGGCTTCTTTTGGAGGCCGGGGAGTGGTAACCAATCACCTCCTTTA
CTCGAAAGTTACCTTTCAAATGGGAATCTTGATGATGCTGCATCAGCAAACATATTGGCTATT
dot-bracket secondary structure
......((((((((((((.(((((((((((((((((((((.((......(((((.((((((.....)))))).((..(((((.....)))))..)).)))
)).(((((....)))))...)).))))))))))))))))))))).))))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
CAATCTGTCAGTGTTTGCAGATGCGGCATCATCAAGATTCACAAACTTTAGTAAGGGCTTCTTTTGGAGGCCGGGGAGTGGTAACCAATCACCTCCTTTA
CTCGAAAGTTACCTTTCAAATGGGAATCTTGATGATGCTGCATCAGCAAACATATTGGCTATT
dot-bracket secondary structure
......((((((((((((.(((((((((((((((((((((.((......(((((.((((((.....)))))).((..(((((.....)))))..)).)))
)).(((((....)))))...)).))))))))))))))))))))).))))))))..))))....
SIMILARITIES| miRBase aly-MIR172e: 0.0000000001 PMRD ptc-miRf11917-akr: 0.0000000005 microPC miR172: 0.00003 | UniProt no hits RFAM mir-172: 0.0000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal, Nat Genet. 43:101-108(2011)., "The genome of Theobroma cacao"
