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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST041226
species: Citrus sinensis
miRNA family: MIR166
source: miRBase, original name: csi-MIR166e (MI0013296)

Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GGGGAGCTTTTTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTACTTGTTGATCCATTAATTTTACGTATTCTCTCATAGATCTAGCATCTGAATG
GTGGATAACAATATACGGATTCAGCTTATTTGGCGTCGTCGGACCAGGCTTCATTCCCCCCAATATATTGCTTCTAT

dot-bracket secondary structure
.((((((....(((.(((.((((((((..((((((..(((.(((.(((...((((((((...........(........)....(((((.(((....)))
.)))))..........))).))))).....))).))).)))..))))))..)))))))).))).)))..))))))..


SIMILARITIES
miRBase ctr-MIR166: 0.0000000000002

PMRD cpt-miR166: 2e-87

microPC miR166: 5e-72		UniProt no hits

RFAM mir-166: 0.0000000002

Identical with: cpt-miR166 from PMRD (MNEST048427)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X, BMC Genomics. 11:246(2010)., "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
[2] Song C, Fang J, Li X, Liu H, Thomas Chao C, Planta. 230:671-685(2009)., "Identification and characterization of 27 conserved microRNAs in citrus"



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