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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041298
species: Populus trichocarpa
miRNA family: MIR156
source: miRBase, original name: ptc-MIR156k (MI0002194)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGGGAGCAC

miRNA*
 GCTTTCTCTTCTTCTGTCACC

mismatches: 2
bulges: 1
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pre-miRNA
 TTATGCATGCTGACAGAAGAGAGGGAGCACAACCCTGTAATAGCTAAAGAGAGTCTTTGCTTTTGTTGGACTGTGCTTTCTCTTCTTCTGTCACCAACCA
A

dot-bracket secondary structure
.......((.(((((((((((((..((((((..((..(((.(((.((((.....))))))).)))..))..))))))..))).)))))))))).))....
.


SIMILARITIES
miRBase tcc-MIR156a: 2e-23

PMRD ptc-miR156k: 1e-52

microPC miR156: 0.0000000003		UniProt no hits

RFAM mir-156: 0.000001

Identical with: ptc-miR156k from PMRD (MNEST051601)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"



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