ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169_1
source: miRBase, original name: ptc-MIR169ac (MI0002248)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGACGACTTGCCCA miRNA* GGCAGTCTCCTTGGCTATG mismatches: 0 bulges: 2 |
pre-miRNA
TTCTTGTTTGTAGCCAAGGACGACTTGCCCACAATATGTATCGTGAGCGTTTCCAATTTGCAACCTCATACTTGGTTTGTTTTGGGCAGTCTCCTTGGCTA
TGCAGAT
dot-bracket secondary structure
)..((((..(((((((((((.((((.(((((.((((...((((((((.(((.(......).))))))))....))).)))).)))))))))))))))))))
)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TTCTTGTTTGTAGCCAAGGACGACTTGCCCACAATATGTATCGTGAGCGTTTCCAATTTGCAACCTCATACTTGGTTTGTTTTGGGCAGTCTCCTTGGCTA
TGCAGAT
dot-bracket secondary structure
)..((((..(((((((((((.((((.(((((.((((...((((((((.(((.(......).))))))))....))).)))).)))))))))))))))))))
)))))..
SIMILARITIES| miRBase ptc-MIR169ad: 3.0E-7 PMRD ptc-miR169ac: 4.0E-56 microPC no hits | UniProt no hits RFAM 5MIR169_5: 7.0E-55 |
Identical with: ptc-miR169ac from PMRD (MNEST051655), ptc-miRf10084-akr from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
