miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST041391
species: Populus trichocarpa
miRNA family: MIR171_1
source: miRBase, original name: ptc-MIR171k (MI0005114)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GGATTGAGCCGCGCCAATATC

miRNA*
TACTGGCTCGGTTCAACCTCA

mismatches: 3
bulges: 0

View larger

pre-miRNA
GATACTGGCTCGGTTCAACCTCATCGTAGTCTTGATGAATGATTCAAATCTATGGTTGGATTGAGCCGCGCCAATATC

dot-bracket secondary structure
((((.((((.((((((((.((.(((((((..((((........))))..))))))).)).)))))))).)))).))))

UniProt no hits

RFAM MIR171_1: 1e-37

Identical with: ptc-miR171k from PMRD (MNEST051694)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record