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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST041395
species: Populus trichocarpa
miRNA family: MIR172
source: miRBase, original name: ptc-MIR172a (MI0002287)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCAT

miRNA*
 GCAGCATCATCAAGATTCACA

mismatches: 1
bulges: 0
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pre-miRNA
 TTGTTTGCAGGTGCAGCATCATCAAGATTCACATTCAAATAGATGTACCGAAGCTATACAGCTATGTAGCTAGCTAGCAATGTATAATCATTGTAGGTGA
GAATCTTGATGATGCTGCATCAGCCATAA

dot-bracket secondary structure
......((.(((((((((((((((((((((.((((......))))((((..(((((((......))))))).....((((((......)))))).)))).
))))))))))))))))))))).)).....


SIMILARITIES
miRBase ptc-MIR172c: 5e-31

PMRD ptc-miRf11124-akr: 3e-69

microPC miR172: 0.000006		UniProt no hits

RFAM mir-172: 6e-68

Identical with: ptc-miR172a from PMRD (MNEST051698)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"



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