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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004140
species:
Oryza sativa
miRNA family:
MIRf74
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGAGGTACCGGTACCTCACG
miRNA*
TGAGGTACCGGTACATCGAGG
mismatches:
1
bulges:
0
View larger
pre-miRNA
TTTTTTTTACCAGAGATTTGCTCCGATCCAACAAAAGTATC
TCGAGGTACCGGTACCTCACG
GTACCAAATCGTTTCCGATTGTTGGATCTAGCTGGACA
GACAGGATGGATATTATTAGATCCAACGATCGAAAATTATTTGGTATCG
TGAGGTACCGGTACATCGAGG
TATTTTTTTTAGTTGGACGGAGCANAATCT
CTTTTTTT
dot-bracket secondary structure
...........((((((.(((((((.(((((((((((((((
((((.((((((((((((((((
(((((((((.((((.((((((((((((((((.((..((
.......))..))...)))))))))))))))).)))).)))))))))))
)))))))))))))).))))))
)))))))....)))))))))))))..))))
))......
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf10871-akr
:
3e-27
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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