ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR473
source: miRBase, original name: ptc-MIR473a (MI0002356)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCTCCCTCAAGGCTTCCA miRNA* AGGCCTTTGGGGGAGAGTGG mismatches: 1 bulges: 1 |
pre-miRNA
ATTGTTCACTCTCCCTCAAGGCTTCCAACGCAATAACCAGCTACGTACATGTAACTGTGTTACGGCTGCAGGCTTGAGGCCTTTGGGGGAGAGTGGTCAA
dot-bracket secondary structure
.(((..(((((((((((((((((((.((.((......((((..(((((((......))).))))))))...)))))))))).)))))))))))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
ATTGTTCACTCTCCCTCAAGGCTTCCAACGCAATAACCAGCTACGTACATGTAACTGTGTTACGGCTGCAGGCTTGAGGCCTTTGGGGGAGAGTGGTCAA
dot-bracket secondary structure
.(((..(((((((((((((((((((.((.((......((((..(((((((......))).))))))))...)))))))))).)))))))))))))..)))
SIMILARITIES| miRBase ptc-MIR473b: 0.000001 PMRD ptc-miR473a: 5e-52 microPC no hits | UniProt no hits RFAM MIR473: 9e-51 |
Identical with: ptc-miR473a from PMRD (MNEST051765) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
