miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST041466
species: Populus trichocarpa
miRNA family: MIR473
source: miRBase, original name: ptc-MIR473a (MI0002356)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ACTCTCCCTCAAGGCTTCCA

miRNA*
AGGCCTTTGGGGGAGAGTGG

mismatches: 1
bulges: 1

View larger

pre-miRNA
ATTGTTCACTCTCCCTCAAGGCTTCCAACGCAATAACCAGCTACGTACATGTAACTGTGTTACGGCTGCAGGCTTGAGGCCTTTGGGGGAGAGTGGTCAA

dot-bracket secondary structure
.(((..(((((((((((((((((((.((.((......((((..(((((((......))).))))))))...)))))))))).)))))))))))))..)))

SIMILARITIES

miRBase ptc-MIR473b: 0.000001

PMRD ptc-miR473a: 5e-52

microPC no hits

UniProt no hits

RFAM MIR473: 9e-51

Identical with: ptc-miR473a from PMRD (MNEST051765)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"