ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR482
source: miRBase, original name: ptc-MIR482 (MI0002397)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCTACTCCTCCCATT miRNA* ATGGGAGAGTATGCAAGAAG mismatches: 1 bulges: 2 |
pre-miRNA
GAGTCCTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAATTCATGATTTAATATTCTTTCTTGCCTACTCCTCCCATTCCATCTGCTTTCT
GCGACTC
dot-bracket secondary structure
(((((.(((.((((...(((((.((((((((((.((((((((((((((((...)))))....))))))))))).)))).)))))))))))...)))).))
).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
[2] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
GAGTCCTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAATTCATGATTTAATATTCTTTCTTGCCTACTCCTCCCATTCCATCTGCTTTCT
GCGACTC
dot-bracket secondary structure
(((((.(((.((((...(((((.((((((((((.((((((((((((((((...)))))....))))))))))).)))).)))))))))))...)))).))
).)))))
SIMILARITIES| miRBase ptc-MIR482: 4e-56 PMRD no hits microPC miR482: 3e-32 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"
[2] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
