ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR166
source: miRBase, original name: sly-MIR166b (MI0008359)
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
TCCCATAGATCATATGGAGGAAGTTCTCTCAGTTGAGGGGAATGTTGTCTGGCTCGAGGTCACCAATTAGATCCATAATCCCTATATATACCATGCTTTT
CAAAAAAAAGATTTATAATATGAAAAGGGGTTATGAATCATGTGTTAGTGTTGTCGGACCAGGCTTCATTCCCCCCAATTGTTACTCCTCTAGCTAGGGG
A
dot-bracket secondary structure
((((.(((......(((((((.((.....((((((.((((((((..((((((..(((.(.(((.(((..(((.((((((((((.(((((......(((((
.....))))).......)))))...)))))))))).)))....))).))).).)))..))))))..)))))))).))))))..))))))))).))).)))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
TCCCATAGATCATATGGAGGAAGTTCTCTCAGTTGAGGGGAATGTTGTCTGGCTCGAGGTCACCAATTAGATCCATAATCCCTATATATACCATGCTTTT
CAAAAAAAAGATTTATAATATGAAAAGGGGTTATGAATCATGTGTTAGTGTTGTCGGACCAGGCTTCATTCCCCCCAATTGTTACTCCTCTAGCTAGGGG
A
dot-bracket secondary structure
((((.(((......(((((((.((.....((((((.((((((((..((((((..(((.(.(((.(((..(((.((((((((((.(((((......(((((
.....))))).......)))))...)))))))))).)))....))).))).).)))..))))))..)))))))).))))))..))))))))).))).)))
)
SIMILARITIES| miRBase ptc-MIR166c: 0.0000000000002 PMRD sly-miR166b: 1e-97 microPC miR166: 0.00000004 | UniProt no hits RFAM mir-166: 1e-64 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
deep sequencing data evidence
references
[1] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T, Genome Res. 18:1602-1609(2008)., "Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"
