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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST041541
species:
Solanum lycopersicum
miRNA family:
MIR171_1
source:
miRBase, original name:
sly-MIR171d
(
MI0008368
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAGCCGCGCCAATATCAC
miRNA*
GATGTTGGTGAGGTTCAATC
mismatches:
2
bulges:
0
View larger
pre-miRNA
ATGGAAGAAGC
GATGTTGGTGAGGTTCAATC
CGAAGACGAATTTATGCTTATTTTCGTAAAGAACGATCTCAGA
TTGAGCCGCGCCAATATCAC
TTCTTA
TTTTCATTCCGT
dot-bracket secondary structure
((((((((((.
((((((((((.(((((((((
.((.((((..((((((........))))))...)).)))).))
))))))).)))))))))).)
))))..
.......)))))
SIMILARITIES
miRBase
rco-MIR171g
:
3e-23
PMRD
sly-miR171d
:
4e-59
microPC
miR171
:
2e-30
UniProt
no hits
RFAM
MIR171_1: 2e-52
Identical with:
sly-miR171d
from PMRD (
MNEST054554
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"