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Species belonging to selected taxon:
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Petunia axillaris subsp. axillaris
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Capsicum annuum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST041545
species:
Solanum lycopersicum
miRNA family:
MIR395
source:
miRBase, original name:
sly-MIR395a
(
MI0008369
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGAAGTGTTTGGGGGAACTCC
miRNA*
AGTTCCCTTGACCACTTCATGA
mismatches:
4
bulges:
0
View larger
pre-miRNA
AGGGCTTACTTTGATGTTGGAAGCCTTG
CTGAAGTGTTTGGGGGAACTCC
CGGGTTGACTTTGAAAATTACGCAAACAAGTATATATAAATGCATGAGTA
CGTATTAGCTAAAGATGATGAGTACAATATTGATTCATGTACCTTTGG
AGTTCCCTTGACCACTTCATGA
GAGCTTAATATTTGATTGTTTGAAGTCCT
dot-bracket secondary structure
(((((((((...(((((((..(((((((
.(((((((.(..((((((((((
.((((...(((((.....((((.(..((.((((......)))).))..).
)))).....)))))...((((((.((....))))))))..))))..))
))))))))..).))))))))))
).)))))))))).....))...)))))))
SIMILARITIES
miRBase
sly-MIR395b
:
8e-22
PMRD
sly-miR395a
:
9e-111
microPC
miR395
:
0.0002
UniProt
no hits
RFAM
mir-395: 9e-19
Identical with:
sly-miR395a
from PMRD (
MNEST054558
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"