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Species belonging to selected taxon:
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Solanum tuberosum
ABOUT THIS RECORD
ID:
MNEST041554
species:
Solanum lycopersicum
miRNA family:
MIR1919
source:
miRBase, original name:
sly-MIR1919b
(
MI0008355
)
Taxonomy by NCBI:
Solanum lycopersicum
Lycopersicon
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACGAGAGTCATCTGTGACAGG
miRNA*
TGTCGCAGATGACTTTCGCCC
mismatches:
1
bulges:
0
View larger
pre-miRNA
GCCTTTGATGTTCACATCTTCCGGTAGTCC
TGTCGCAGATGACTTTCGCCC
ATTTATGGAACCACACTTTCTTTAATTTGAATTCTATGTGGTAGG
ACGA
GAGTCATCTGTGACAGG
ATAATGGAAGATCGAGTTATCAAAGGC
dot-bracket secondary structure
((((((((((.....((((((((...((((
((((((((((((((((((.((
(....))).((((((..(((........))).....))))))...
.)))
)))))))))))))))))
))..)))))))).....))))))))))
SIMILARITIES
miRBase
sly-MIR1919c
:
1e-75
PMRD
sly-miR1919b
:
4e-78
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
sly-miR1919b
from PMRD (
MNEST054567
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
deep sequencing data evidence
references
[
1
] Moxon S, Jing R, Szittya G, Schwach F, Rusholme Pilcher RL, Moulton V, Dalmay T,
Genome Res. 18:1602-1609(2008).
,
"Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening"