ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1428
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGATAATGCCATGAATTTG miRNA* AATTCACAGGCCCTATCTTGTG mismatches: 3 bulges: 1 |
pre-miRNA
CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATA
ATGCCATGAATTTGTCAAGCGTTCAAACCCACT
dot-bracket secondary structure
.....((((...((((((((((((((((..(((..((((((((((((....((.((((((((.((.....)).)))))))).))....))))))))))))
..))).))))))))))))))))...))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
CAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATA
ATGCCATGAATTTGTCAAGCGTTCAAACCCACT
dot-bracket secondary structure
.....((((...((((((((((((((((..(((..((((((((((((....((.((((((((.((.....)).)))))))).))....))))))))))))
..))).))))))))))))))))...))))....
SIMILARITIES| miRBase osa-MIR1428e: 8e-58 PMRD osa-miR1428d: 9e-33 microPC miR1428: 1e-19 | UniProt no hits RFAM MIR1428: 6e-65 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
