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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004172
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAGACTTTCTAACATTGTCC

miRNA*
 GCAATGCTAGAAAGTCTTATA

mismatches: 1
bulges: 0
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pre-miRNA
 CATTATTTTATACTACCTCCATTTCAGGTTATAAGACTTTCTAACATTGTCCACATTCATATAGATGTTAATGAATCTAGGTACATATATATGTCTAGAT
TTATTAACATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATATGAAATAGAGGAAGTAGCATGATCC

dot-bracket secondary structure
..........((((.((((.((((((.((((((((((((((((.(((((((((((((((((((.((((((((((((((((..((((....))))))))))
)))))))))).))))))))))))))))))).)))))))))))))))).)))))).)))).)))).........


SIMILARITIES
miRBase osa-MIR819j: 4e-63

PMRD osa-miR819j: 4e-63

microPC miR819: 7e-28		UniProt no hits

RFAM MIR1122: 5e-54		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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