miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004178
species: Oryza sativa
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAAGACTTTCTAGCATTGCTC

miRNA*
 GCAATGCTAGAAAATCTTACA

mismatches: 1
bulges: 0
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pre-miRNA
 ACTGCTACTTCCTCTATTTCACAATGTAAGACTTTCTAGCATTGCTCATATTCATTAATATCTATATGTATGTGGGCAATGCTAGAAAATCTTACATTAT
GAAACGGAGGGAGTACCCA

dot-bracket secondary structure
.....((((((((((.(((((.(((((((((.(((((((((((((((((((.(((..........))).))))))))))))))))))).))))))))).)
)))).))))))))))....


SIMILARITIES
miRBase osa-MIR819k: 0.000000000000002

PMRD osa-miRf10787-akr: 7e-18

microPC miR1436: 1e-56		UniProt no hits

RFAM MIR1122: 3e-26		most similar mature miRNAs

Identical with: miR1436 from microPC (MNEST046437)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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