ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5171 (MI0018140)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTAATATGGGACGGAAGAA miRNA* CCTACTTCTCATATTACGTGC mismatches: 5 bulges: 0 |
pre-miRNA
ATTCAAACATTTGCCAAAATTGCATGCTTCCTACTTCTCATATTACGTGCCGAAATTTTACATAGATCTATATACATTCATATTTGAACAAATTTAAGTC
ACTTAATATGGGACGGAAGAAGTATGTTATTTTACCGTCGCGTTAGCTGACGTG
dot-bracket secondary structure
...............(((((.(((((((((...(.((((((((((.((((..((((((...(((......)))...((((....)))).))))))..).)
)).)))))))))).)...))))))))).)))))..((((((....)).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
ATTCAAACATTTGCCAAAATTGCATGCTTCCTACTTCTCATATTACGTGCCGAAATTTTACATAGATCTATATACATTCATATTTGAACAAATTTAAGTC
ACTTAATATGGGACGGAAGAAGTATGTTATTTTACCGTCGCGTTAGCTGACGTG
dot-bracket secondary structure
...............(((((.(((((((((...(.((((((((((.((((..((((((...(((......)))...((((....)))).))))))..).)
)).)))))))))).)...))))))))).)))))..((((((....)).))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.00000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
