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Species belonging to selected taxon:

Brachypodium distachyon



ABOUT THIS RECORD

ID: MNEST041856
species: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5183 (MI0018156)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATTTGGACAAATTTGAGTCA

miRNA*
TCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATATTTG

mismatches: 7
bulges: 37

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pre-miRNA
CCTGCCAGGATATGGTTTGATAAATGCATCCTCCGATTCTAAATTGTTGTCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATAT
TTG
GACAAATTTGAGTCAAGAGTTTAGAATCAGAGATAGTAGCAAATATATC


dot-bracket secondary structure
........((((((.((((.....((((((.((.(((((((((((.((((((((.........(((.((((.(.........).)))).)))(((((...
.))
)))...)))))..))).))))))))))).))))).))).))))))))))



SIMILARITIES
miRBase bdi-MIR1122: 0.0000005

PMRD bdi-miR1122: 0.0000005

microPC no hits
UniProt no hits

RFAM MIR1122: 2e-25

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"




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