ABOUT THIS RECORDspecies: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5183 (MI0018156)
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTTGGACAAATTTGAGTCA miRNA* TCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATATTTG mismatches: 7 bulges: 37 |
pre-miRNA
CCTGCCAGGATATGGTTTGATAAATGCATCCTCCGATTCTAAATTGTTGTCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATAT
TTGGACAAATTTGAGTCAAGAGTTTAGAATCAGAGATAGTAGCAAATATATC
dot-bracket secondary structure
........((((((.((((.....((((((.((.(((((((((((.((((((((.........(((.((((.(.........).)))).)))(((((...
.)))))...)))))..))).))))))))))).))))).))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
CCTGCCAGGATATGGTTTGATAAATGCATCCTCCGATTCTAAATTGTTGTCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATAT
TTGGACAAATTTGAGTCAAGAGTTTAGAATCAGAGATAGTAGCAAATATATC
dot-bracket secondary structure
........((((((.((((.....((((((.((.(((((((((((.((((((((.........(((.((((.(.........).)))).)))(((((...
.)))))...)))))..))).))))))))))).))))).))).))))))))))
SIMILARITIES| miRBase bdi-MIR1122: 0.0000005 PMRD bdi-miR1122: 0.0000005 microPC no hits | UniProt no hits RFAM MIR1122: 2e-25 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"
