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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041856
species: Brachypodium distachyon
source: miRBase, original name: bdi-MIR5183 (MI0018156)

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATTTGGACAAATTTGAGTCA

miRNA*
 TCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATATTTG

mismatches: 7
bulges: 37
View larger
pre-miRNA
 CCTGCCAGGATATGGTTTGATAAATGCATCCTCCGATTCTAAATTGTTGTCGAAATATTTTATGTATCTATACGTTTTTTAAGAATAGCTACGTCCATAT
TTGGACAAATTTGAGTCAAGAGTTTAGAATCAGAGATAGTAGCAAATATATC

dot-bracket secondary structure
........((((((.((((.....((((((.((.(((((((((((.((((((((.........(((.((((.(.........).)))).)))(((((...
.)))))...)))))..))).))))))))))).))))).))).))))))))))


SIMILARITIES
miRBase bdi-MIR1122: 0.0000005

PMRD bdi-miR1122: 0.0000005

microPC no hits		UniProt no hits

RFAM MIR1122: 2e-25

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G, Genomics. [Epub prior to print](2011)., "Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs"



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