miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004186
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGCAATGCTAGAAAGTTTT

miRNA*
 GACTTTCTACCAGACTCACA

mismatches: 3
bulges: 1
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pre-miRNA
 TTCTTGCTTCGTTCGTTTCATATTATAAGACTTTCTACCAGACTCACATTCATATATATGGTAATGAATCTAAATATATATGTGTGCCTAGATCCATTAA
TAACTATATGAATGTGGGCAATGCTAGAAAGTTTTATAATATGAAACGGAGGTAATAATA

dot-bracket secondary structure
...(((((((...((((((((((((((((((((((((.((..((((((((((((((..((.(((((.(((((.((((....))))...))))).))))).
))..))))))))))))))...)).))))))))))))))))))))))))))))))).....


SIMILARITIES
miRBase osa-MIR819e: 5e-41

PMRD osa-miR819e: 5e-41

microPC miR446: 9e-18		UniProt no hits

RFAM MIR1122: 3e-33		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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