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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041879
species: Festuca arundinacea
miRNA family: MIR1122
source: miRBase, original name: far-MIR1122 (MI0016607)

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGATACATCCGTATCTAGA

miRNA*
 TAGATTCAGATGTATCTAAA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TCTAAAGAAGTTATTCGCTACAAGTTAACAAGATGACCGGGCATTGTACACTCAATGACCTCACAATAAGCACCATTTCATCAAAAAATTACTACTACCT
CCGTCTAAAAATAAGTGTCTTAGTTTTGTCTAGATTCAGATGTATCTAAACATATTTTAGTTGTAGATACATCCGTATCTAGAAAAAGTTGAGACACTTA
TTTTTGTACGGAGGGAGTAGAATATTTGTTATGAAACCCAGGACATGAGTTGTTATCATACAATCTTGTGGTACATGAAGAGATAACAAAACGAAGAAGT


dot-bracket secondary structure
.........((((((..((.((.((..(((((((..((.(((((((......))))).))...............((((((..(((.(((.(((((.(((
((((.(((((((((((((((((..(((.(((((((.(.(((((((((((((........))).)))))))))).).))))))).)))..)))))))))))
)))))).))))))).)))))))).)))...))))))....))..((((.......))))...)))))))...)).)).)).)))))).............



SIMILARITIES
miRBase tae-MIR1135: 0.0000003

PMRD tae-miR1135: 0.0000003

microPC miR1135: 0.000001		UniProt no hits

RFAM MIR1122: 0.0000003

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Unver T, Bakar M, Shearman RC, Budak H, Mol Genet Genomics. 283:397-413(2010)., "Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application"



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