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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST041881
species:
Hordeum vulgare
miRNA family:
MIR156
source:
miRBase, original name:
hvu-MIR156
(
MI0016449
)
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA
miRNA*
TGCTCACCCTCTCTCTGTCT
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGACAGAAGAGAGTGAGCACA
CAGCGGCAGGCTACGTCTGATAAGAGCATGGTTAATAGTATAGCCAACTGCTGGCTATACTATGAGCACGTGCTTAGAC
GCAGCTGCTGTTGCG
TGCTCACCCTCTCTCTGTCT
dot-bracket secondary structure
.((((((((((.((((((((.
(((((((((.((.(((((.....((((((((((.((((((((((((.....)))))))))))).))).)))))))))))
).))))))))))).)
))))))).)))).)))))).
SIMILARITIES
miRBase
tae-MIR156
:
0.000000000000002
PMRD
hvv-miR156a
:
6e-40
microPC
miR156
:
0.0000004
UniProt
no hits
RFAM
mir-156: 0.0000005
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
references
[
1
] Dryanova A, Zakharov A, Gulick PJ,
Genome. 51:433-443(2008).
,
"Data mining for miRNAs and their targets in the Triticeae"