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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041883
species: Hordeum vulgare
miRNA family: MIR159
source: miRBase, original name: hvu-MIR159b (MI0016451)

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG

miRNA*
GGGCCCTCTTAGATCTAGCCA

mismatches: 5
bulges: 0

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pre-miRNA
CTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTGATCTATTACTAATTAGTTTCCTCTTCCTTCTGCTGCATGCAAGCCTGGAAATCATTTGTGGG
GCCCTCTTAGATCTAGCCA
TGG


dot-bracket secondary structure
....(((.((.(((((((.(((((.((((..((...(((.(((........))).......((((....(((.......)))..)))).)))..))..))
)).))))).))))))).))
)))



SIMILARITIES
miRBase zma-MIR159b: 0.00000000000003

PMRD hvv-miR159a: 6e-40

microPC miR159: 0.00002
UniProt no hits

RFAM MIR159: 0.0000000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
degradome data
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references

[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"




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