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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST041884
species:
Hordeum vulgare
miRNA family:
MIR166
source:
miRBase, original name:
hvu-MIR166
(
MI0016455
)
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCCC
miRNA*
GGAATGACNCCGGGTCCNAAAGAGAGA
mismatches:
3
bulges:
6
View larger
pre-miRNA
CATGGTTGTCGAGG
GGAATGACNCCGGGTCCNAAAGAGAGA
CNCTCGCATGGCGTGCGCGTGGTGCGTT
TCGGACCAGGCTTCATTCCCC
ATGACTCCAT
dot-bracket secondary structure
.((((..((((.((
(((((((..((.(((((......((((
(....((((.(((....))).)))))))
))))))).))..)))))))))
.)))).))))
SIMILARITIES
miRBase
hvu-MIR166c
:
2e-33
PMRD
hvv-miR166
:
2e-33
microPC
miR166
:
2e-33
UniProt
no hits
RFAM
mir-166: 3e-38
Identical with:
hvv-miR166
from PMRD (
MNEST048660
)
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[
1
] Dryanova A, Zakharov A, Gulick PJ,
Genome. 51:433-443(2008).
,
"Data mining for miRNAs and their targets in the Triticeae"