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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041890
species: Hordeum vulgare
miRNA family: MIR171
source: miRBase, original name: hvu-MIR171 (MI0016461)

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGCTCGACTCACTCAGA

mismatches: 3
bulges: 0

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pre-miRNA
GCGGGTTGATGGCCAGGAACTCCGACAAGAGGAGGATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGC
GGCGGCGGTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGCTCGTCCCTTGTCGCCATCACCCAC


dot-bracket secondary structure
..((((.((((((..((....))((((((.(((.((.(((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)
))))..)).))))).)))).)).))))))))).))))))).))))).)))).)))))))))))))))))))..



SIMILARITIES
miRBase tae-MIR171a: 0.000000000000002

PMRD hvv-miR171: 1e-38

microPC miR171: 1e-38
UniProt no hits

RFAM MIR171_1: 0.000000000003

Identical with: miR171 from microPC (MNEST046135)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
[2] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[3] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"




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