miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041890
species: Hordeum vulgare
miRNA family: MIR171
source: miRBase, original name: hvu-MIR171 (MI0016461)

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGCTCGACTCACTCAGA

mismatches: 3
bulges: 0

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pre-miRNA
GCGGGTTGATGGCCAGGAACTCCGACAAGAGGAGGATGCTGAAACGGTCACTATGATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGC
GGCGGCGGTTCTGATTGAGCCGTGCCAATATCTTAGTGCTCTTTCATGCTCGTCCCTTGTCGCCATCACCCAC


dot-bracket secondary structure
..((((.((((((..((....))((((((.(((.((.(((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)
))))..)).))))).)))).)).))))))))).))))))).))))).)))).)))))))))))))))))))..



SIMILARITIES
miRBase tae-MIR171a: 0.000000000000002

PMRD hvv-miR171: 1e-38

microPC miR171: 1e-38
UniProt no hits

RFAM MIR171_1: 0.000000000003

Identical with: miR171 from microPC (MNEST046135)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references

[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"
[2] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
[3] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"




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