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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041891
species: Hordeum vulgare
miRNA family: MIR397
source: miRBase, original name: hvu-MIR397 (MI0016465)

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCGTTGAGTGCAGCGTTGATG

miRNA*
 CCGGCGCTGCACGCAATGACG

mismatches: 3
bulges: 0
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pre-miRNA
 CGCAGAGGTGCCGTTGAGTGCAGCGTTGATGAACCGTCCGGCCATGGCCCGTCCGCCTCCACCGAGGCCGGAGCGGTTCACCGGCGCTGCACGCAATGAC
GCCTCTGCTTTCT

dot-bracket secondary structure
.(((((((((.(((((.(((((((((((.((((((((((((((.(((..............))).))))))).))))))).))))))))))).))))).)
)))))))).....


SIMILARITIES
miRBase osa-MIR397b: 0.00002

PMRD tae-miR2029: 0.0000000000004

microPC miR397: 0.0003		UniProt no hits

RFAM MIR397: 0.0004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references
[1] Dryanova A, Zakharov A, Gulick PJ, Genome. 51:433-443(2008)., "Data mining for miRNAs and their targets in the Triticeae"



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