ABOUT THIS RECORDspecies: Hordeum vulgare
source: miRBase, original name: hvu-MIR1126 (MI0016744)
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAACTATGGACTACATACGGAA miRNA* CCATATGTAGCCCATAGGGAAAT mismatches: 6 bulges: 0 |
pre-miRNA
TTTTTAAAGATTCAACTATGGACTACATACGGAACAAAATGAGTGAACTTACACTCTGAATTATGTCTATATATATATCCATATGTAGCCCATAGGGAAA
TCTC
dot-bracket secondary structure
.......(((((...((((((.(((((((.(((.......(((((......))))).....(((((....)))))..))).))))))).))))))...))
))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
TTTTTAAAGATTCAACTATGGACTACATACGGAACAAAATGAGTGAACTTACACTCTGAATTATGTCTATATATATATCCATATGTAGCCCATAGGGAAA
TCTC
dot-bracket secondary structure
.......(((((...((((((.(((((((.(((.......(((((......))))).....(((((....)))))..))).))))))).))))))...))
))).
SIMILARITIES| miRBase tae-MIR1122: 0.000000000001 PMRD tae-miR1122: 0.000000000001 microPC miR1436: 0.00000008 | UniProt no hits RFAM MIR1122: 0.000000000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Kantar M, Unver T, Budak H, Funct Integr Genomics. 10:493-507(2010)., "Regulation of barley miRNAs upon dehydration stress correlated with target gene expression"
