ABOUT THIS RECORDspecies: Citrus sinensis
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Citrus sinensis Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGCCAAGAATGACTTGCCGA miRNA* GGCAGGCCATTCTTGTCTCAA mismatches: 3 bulges: 0 |
pre-miRNA
TTGGAAATTGGTCTAGGGTTTCTTATATGAAGGGATAAATAGAGGATCTAGAGCCAAGAATGACTTGCCGACGGCATTGACCATAATATCATACGGCAGG
CCATTCTTGTCTCAACTCCGCTCTCTATCTTCTCATCTGAGACTCTCGGACACTGACAACCA
dot-bracket secondary structure
.(((......((((((((((((....((((.((((((...((((((....(((.((((((((.(((((((..((.((((....)))).))...)))))))
.)))))))).)))...)))..))).)))))).))))..)))))))).))))........)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGAAATTGGTCTAGGGTTTCTTATATGAAGGGATAAATAGAGGATCTAGAGCCAAGAATGACTTGCCGACGGCATTGACCATAATATCATACGGCAGG
CCATTCTTGTCTCAACTCCGCTCTCTATCTTCTCATCTGAGACTCTCGGACACTGACAACCA
dot-bracket secondary structure
.(((......((((((((((((....((((.((((((...((((((....(((.((((((((.(((((((..((.((((....)))).))...)))))))
.)))))))).)))...)))..))).)))))).))))..)))))))).))))........)))
SIMILARITIES| miRBase csi-MIR169: 9e-89 PMRD ptc-miR169t: 0.0005 microPC miR169: 1e-29 | UniProt no hits RFAM MIR169_2: 0.0006 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST046402) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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