miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST041900
species: Hordeum vulgare
source: miRBase, original name: hvu-MIR5050 (MI0017937)

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGGTCGTTCAACCAGCAA

miRNA*
 TGCCGGTTGAACGACCTCACCA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GCTGGTGTTTTTGCCGGTTGAACGACCTCACCATGTCGACCGCCTCTTCCTTGACAGGTATCAGGAAGAAAAGATCTGCTCGTGCCATGTTGAGGTCGTT
CAACCAGCAAAACGGCGGC

dot-bracket secondary structure
((((.((((((.((.(((((((((((((((.((((..((.(...(((((((.((......)))))))))...).)).((....)))))).))))))))))
))))).)))))))).))))


SIMILARITIES
miRBase no hits

PMRD tae-miR2023b: 8e-30

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa

references
[1] Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U, BMC Genomics. 12:129(2011)., "Discovery of barley miRNAs through deep sequencing of short reads_field"



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