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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST041905
species:
Oryza sativa
miRNA family:
MIR156
source:
miRBase, original name:
osa-MIR156b
(
MI0000654
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCACTCTCTATCTGTCAGC
mismatches:
0
bulges:
1
View larger
pre-miRNA
TTGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTC
TGACAGAAGAGAGTGAGCAC
ACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGA
GCTGTGCGT
GCTCACTCTCTATCTGTCAGC
CGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAG
dot-bracket secondary structure
.((((((((((((((.(((((((....(((((..(((.((.(
((((((((((((((((((((
.((((((....(((((((((((....).))))))))))
)))))).))
))))))))))).)))))))))
).....))).)))))....))))..))).))))))))))..)))).
SIMILARITIES
miRBase
ssp-MIR156
:
8e-34
PMRD
osa-miR156b
:
4e-97
microPC
miR156
:
2e-43
UniProt
no hits
RFAM
mir-156: 3e-43
Identical with:
miR156
from microPC (
MNEST045399
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP,
Genes Dev. 16:1616-1626(2002).
,
"MicroRNAs in plants"