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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004195
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AATGACTTACGTTGTGAAAAA
miRNA*
TTTCATAATGTAAGTCATTCT
mismatches:
2
bulges:
0
View larger
pre-miRNA
TGTCTTATGTAGTACTTCCTCCG
TTTCATAATGTAAGTCATTCT
TGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGA
TTCATCAACATCAATATGAATGTGGGGAATGCTAG
AATGACTTACGTTGTGAAAAA
GAGGGAGTAGCAACCAATTC
dot-bracket secondary structure
.......(((..(((((((((..
(((((((((((((((((((((
.(((((((((((((((((((((((((.(((((((((((((........))))))))
))))).)).))))))))))))))))))))))).))
)))))))))))))))))))..
))))))))))))........
SIMILARITIES
miRBase
osa-MIR809d
:
3e-55
PMRD
osa-miR809d
:
3e-55
microPC
miR809
:
2e-22
UniProt
no hits
RFAM
MIR1122: 1e-51
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record