ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: miRBase, original name: osa-MIR167b (MI0000677)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGCTGTGACAGTTTCACT mismatches: 0 bulges: 2 |
pre-miRNA
GTGCCCAAGAGAAAGCGTGAAGCTGCCAGCATGATCTAACTTGCAGACAAGAAATCAGCTCAGCTCGCTGGTTTCGAACAGGAAGGCGGCTAGCTGAGGC
TTCTTCTGAGTACGTGATGGTTAGATCATGCTGTGACAGTTTCACTCCTTCCCTGTTGGGCAC
dot-bracket secondary structure
((((((((.((.(((.(((((((((((((((((((((((((.((..((.((((...(((((((((.((((.((((......)))).)))).)))))).))
)..))))..))..))...))))))))))))))).).)))))))))..)))..)).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GTGCCCAAGAGAAAGCGTGAAGCTGCCAGCATGATCTAACTTGCAGACAAGAAATCAGCTCAGCTCGCTGGTTTCGAACAGGAAGGCGGCTAGCTGAGGC
TTCTTCTGAGTACGTGATGGTTAGATCATGCTGTGACAGTTTCACTCCTTCCCTGTTGGGCAC
dot-bracket secondary structure
((((((((.((.(((.(((((((((((((((((((((((((.((..((.((((...(((((((((.((((.((((......)))).)))).)))))).))
)..))))..))..))...))))))))))))))).).)))))))))..)))..)).))))))))
SIMILARITIES| miRBase zma-MIR167b: 0.000000000000009 PMRD osa-miR167b: 2e-89 microPC miR167: 0.00003 | UniProt no hits RFAM MIR167_1: 2e-81 |
Identical with: osa-miR167b from PMRD (MNEST048860) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
