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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST041960
species:
Oryza sativa
miRNA family:
MIR167
source:
miRBase, original name:
osa-MIR167j
(
MI0001156
)
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GATCGTGCTGCGCAGTTTCATC
mismatches:
0
bulges:
1
View larger
pre-miRNA
TTGTGATGTGTGCACCTTAAGCAGC
TGAAGCTGCCAGCATGATCTG
ATCTTTTGCGATCTCTTTTTTTATCTGAATAAGTTGATGGAAATATTGGGTTCC
TAAGATTCA
GATCGTGCTGCGCAGTTTCATC
TGCTAATCGATGCACTACACTGTGAATTT
dot-bracket secondary structure
(..(..(((((((((..(.(((((.
(((((((((((((((((((((
(((((..(.((.(((..((((((((..........))))))))....))).)))
.)))).)))
)))))))))).))))))))).)
)))).)..).))))).)))..)..)....
SIMILARITIES
miRBase
sbi-MIR167g
:
9e-18
PMRD
osa-miR167j
:
5e-75
microPC
miR167
:
3e-39
UniProt
no hits
RFAM
MIR167_1: 3e-55
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
deep sequencing data evidence
references
[
1
] Li Y, Li W, Jin YX,
Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005).
,
"Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"