ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169_5
source: miRBase, original name: osa-MIR169q (MI0001132)
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGAGACTGCCCATG miRNA* CAGGCAAGTCATCCTTGGCTATC mismatches: 2 bulges: 2 |
pre-miRNA
CCACTCAGGCTAGCCAAGGAGACTGCCCATGAACCAGCTTAAAGGATCATTAAATTGCTAATCCTTCAGGGAGGACACAGGCAAGTCATCCTTGGCTATC
AGAGATAA
dot-bracket secondary structure
...(((.((.(((((((((((((((((..((..((..(((.((((((((......))...)))))).)))..)).))..))).)))).))))))))))))
.)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CCACTCAGGCTAGCCAAGGAGACTGCCCATGAACCAGCTTAAAGGATCATTAAATTGCTAATCCTTCAGGGAGGACACAGGCAAGTCATCCTTGGCTATC
AGAGATAA
dot-bracket secondary structure
...(((.((.(((((((((((((((((..((..((..(((.((((((((......))...)))))).)))..)).))..))).)))).))))))))))))
.)))....
SIMILARITIES| miRBase osa-MIR169l: 1e-56 PMRD osa-miR169q: 1e-56 microPC miR169: 1e-43 | UniProt no hits RFAM MIR169_5: 2e-55 |
Identical with: miR169 from microPC (MNEST046089) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
