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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004200
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGGCAATGCTAGAAAGTCTT

miRNA*
 GACTTTCTAACATTGGCCACAT

mismatches: 3
bulges: 1
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pre-miRNA
 ATTTTATACTACCTCCATTTCAGGGTATAAGACTTTCTAACATTGGCCACATTCATATAAATGTTAATGAATCTAGGGACATATATATGGCTAAATTTAT
TAACATATATATGAATGGGGGCAATGCTAGAAAGTCTTATAATATGAAATAGAGGAAGTACCATG

dot-bracket secondary structure
......((((.((((.((((((...((((((((((((((.(((((.((.((((((((((.((((((((((((.(((...(((....))).))).))))))
)))))).))))))))))..))))))).))))))))))))))...)))))).)))).)))).....


SIMILARITIES
miRBase osa-MIR819j: 4e-51

PMRD osa-miR819j: 4e-51

microPC miR1130: 1e-20		UniProt no hits

RFAM MIR1122: 2e-44		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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